This document describes the namespace http://pgxo.loria.fr/. The preferred prefix for this namespace is pgxo.
Content negotiation is supported for HTML and RDF/XML.
The OWL ontology file can be accessed directly from http://pgxo.loria.fr/data/pgxo.owl. This URL should be used to import the ontology in another service, such as Protégé.
Documentation, examples and issue reporting can be found on
GitHub.
A full description of the motivation, implementation and instantiation of PGxO
is available in the related publication.
When citing PGxO, please use the following reference:
Monnin, P., Legrand, J., Husson, G., Ringot, P., Tchechmedjiev, A.,
Jonquet, C., Napoli, A., & Coulet, A.
PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances,
enabling further comparison. BMC Bioinformatics 20-S(4): 139:1-139:16 (2019).
@Article{Monnin2019,
author="Monnin, Pierre
and Legrand, Jo{\"e}l
and Husson, Graziella
and Ringot, Patrice
and Tchechmedjiev, Andon
and Jonquet, Cl{\'e}ment
and Napoli, Amedeo
and Coulet, Adrien",
title="PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison",
journal="BMC Bioinformatics",
year="2019",
month="Apr",
day="18",
volume="20-S",
number="4",
pages="139",
issn="1471-2105",
doi="10.1186/s12859-019-2693-9",
url="https://doi.org/10.1186/s12859-019-2693-9"
}
Object property
URI: http://pgxo.loria.fr/causes
Subproperty of: influences
Inverse of: isCausedBy
Object property
URI: http://pgxo.loria.fr/decreases
Subproperty of: influences
Inverse of: isDecreasedBy
Object property
URI: http://pgxo.loria.fr/decreasesChanceOf
Subproperty of: influences
Inverse of: hasChanceDecreasedBy
Class
URI: http://pgxo.loria.fr/Disease
Subclass of: Phenotype
Object property
URI: http://pgxo.loria.fr/doesNotCause
Subproperty of: doesNotInfluence
Inverse of: isNotCausedBy
Object property
URI: http://pgxo.loria.fr/doesNotDecrease
Subproperty of: doesNotInfluence
Inverse of: isNotDecreasedBy
Object property
URI: http://pgxo.loria.fr/doesNotDecreaseChanceOf
Subproperty of: doesNotInfluence
Inverse of: hasNotChanceDecreasedBy
Object property
URI: http://pgxo.loria.fr/doesNotIncrease
Subproperty of: doesNotInfluence
Inverse of: isNotIncreasedBy
Object property
URI: http://pgxo.loria.fr/doesNotIncreaseChanceOf
Subproperty of: doesNotInfluence
Inverse of: hasNotChanceIncreasedBy
Object property
URI: http://pgxo.loria.fr/doesNotInfluence
Subproperty of: isNotAssociatedWith
Inverse of: isNotInfluencedBy
Object property
URI: http://pgxo.loria.fr/doesNotMetabolize
Subproperty of: doesNotInfluence
Inverse of: isNotMetabolizedBy
Object property
URI: http://pgxo.loria.fr/doesNotTransport
Subproperty of: doesNotInfluence
Inverse of: isNotTransportedBy
Object property
URI: http://pgxo.loria.fr/doesNotTreat
Subproperty of: isNotAssociatedWith
Inverse of: isNotTreatedBy
Class
URI: http://pgxo.loria.fr/Drug
Class
URI: http://pgxo.loria.fr/Gene
Subclass of: Genetic factor
Class
URI: http://pgxo.loria.fr/GeneticFactor
Class
URI: http://pgxo.loria.fr/GenomicVariation
Subclass of: Genetic factor
Class
URI: http://pgxo.loria.fr/Haplotype
Subclass of: Genomic variation
Object property
URI: http://pgxo.loria.fr/hasChanceDecreasedBy
Subproperty of: isInfluencedBy
Inverse of: decreasesChanceOf
Object property
URI: http://pgxo.loria.fr/hasChanceIncreasedBy
Subproperty of: isInfluencedBy
Inverse of: increasesChanceOf
Object property
URI: http://pgxo.loria.fr/hasNotChanceDecreasedBy
Subproperty of: isNotInfluencedBy
Inverse of: doesNotDecreaseChanceOf
Object property
URI: http://pgxo.loria.fr/hasNotChanceIncreasedBy
Subproperty of: isNotInfluencedBy
Inverse of: doesNotIncreaseChanceOf
Object property
URI: http://pgxo.loria.fr/increases
Subproperty of: influences
Inverse of: isIncreasedBy
Object property
URI: http://pgxo.loria.fr/increasesChanceOf
Subproperty of: influences
Inverse of: hasChanceIncreasedBy
Object property
URI: http://pgxo.loria.fr/influences
Subproperty of: isAssociatedWith
Inverse of: isInfluencedBy
Object property
URI: http://pgxo.loria.fr/isAssociatedWith
Symmetric property
Object property
URI: http://pgxo.loria.fr/isCausedBy
Subproperty of: isInfluencedBy
Inverse of: causes
Object property
URI: http://pgxo.loria.fr/isDecreasedBy
Subproperty of: isInfluencedBy
Inverse of: decreases
Object property
URI: http://pgxo.loria.fr/isIncreasedBy
Subproperty of: isInfluencedBy
Inverse of: increases
Object property
URI: http://pgxo.loria.fr/isInfluencedBy
Subproperty of: isAssociatedWith
Inverse of: influences
Object property
URI: http://pgxo.loria.fr/isMetabolizedBy
Subproperty of: isInfluencedBy
Inverse of: metabolizes
Object property
URI: http://pgxo.loria.fr/isNotAssociatedWith
Symmetric property
Object property
URI: http://pgxo.loria.fr/isNotCausedBy
Subproperty of: isNotInfluencedBy
Inverse of: doesNotCause
Object property
URI: http://pgxo.loria.fr/isNotDecreasedBy
Subproperty of: isNotInfluencedBy
Inverse of: doesNotDecrease
Object property
URI: http://pgxo.loria.fr/isNotIncreasedBy
Subproperty of: isNotInfluencedBy
Inverse of: doesNotIncrease
Object property
URI: http://pgxo.loria.fr/isNotInfluencedBy
Subproperty of: isNotAssociatedWith
Inverse of: doesNotInfluence
Object property
URI: http://pgxo.loria.fr/isNotMetabolizedBy
Subproperty of: isNotInfluencedBy
Inverse of: doesNotMetabolize
Object property
URI: http://pgxo.loria.fr/isNotTransportedBy
Subproperty of: isNotInfluencedBy
Inverse of: doesNotTransport
Object property
URI: http://pgxo.loria.fr/isNotTreatedBy
Subproperty of: isNotAssociatedWith
Inverse of: doesNotTreat
Object property
URI: http://pgxo.loria.fr/isTransportedBy
Subproperty of: isInfluencedBy
Inverse of: transports
Object property
URI: http://pgxo.loria.fr/isTreatedBy
Subproperty of: isAssociatedWith
Inverse of: treats
Object property
URI: http://pgxo.loria.fr/metabolizes
Subproperty of: influences
Inverse of: isMetabolizedBy
Class
URI: http://pgxo.loria.fr/PharmacodynamicPhenotype
Subclass of: Phenotype
Class
URI: http://pgxo.loria.fr/PharmacogenomicRelationship
Subclass of: prov:Entity
Class
URI: http://pgxo.loria.fr/PharmacokineticPhenotype
Subclass of: Phenotype
Class
URI: http://pgxo.loria.fr/Phenotype
Object property
URI: http://pgxo.loria.fr/qualifiedProxy
Object property
URI: http://pgxo.loria.fr/qualifiedVariation
Object property
URI: http://pgxo.loria.fr/transports
Subproperty of: influences
Inverse of: isTransportedBy
Object property
URI: http://pgxo.loria.fr/treats
Subproperty of: isAssociatedWith
Inverse of: isTreatedBy
Class
URI: http://pgxo.loria.fr/Variant
Subclass of: Genomic variation