PGxO

Introduction

This document describes the namespace http://pgxo.loria.fr/. The preferred prefix for this namespace is pgxo.

Content negotiation is supported for HTML and RDF/XML.

The OWL ontology file can be accessed directly from http://pgxo.loria.fr/data/pgxo.owl. This URL should be used to import the ontology in another service, such as Protégé.

Documentation, examples and issue reporting can be found on GitHub.
A full description of the motivation, implementation and instantiation of PGxO is available in the related publication.

Citing PGxO

When citing PGxO, please use the following reference:
Monnin, P., Legrand, J., Husson, G., Ringot, P., Tchechmedjiev, A., Jonquet, C., Napoli, A., & Coulet, A. PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison. BMC Bioinformatics 20-S(4): 139:1-139:16 (2019).

@Article{Monnin2019,
    author="Monnin, Pierre
    and Legrand, Jo{\"e}l
    and Husson, Graziella
    and Ringot, Patrice
    and Tchechmedjiev, Andon
    and Jonquet, Cl{\'e}ment
    and Napoli, Amedeo
    and Coulet, Adrien",
    title="PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison",
    journal="BMC Bioinformatics",
    year="2019",
    month="Apr",
    day="18",
    volume="20-S",
    number="4",
    pages="139",
    issn="1471-2105",
    doi="10.1186/s12859-019-2693-9",
    url="https://doi.org/10.1186/s12859-019-2693-9"
}
        

Index

causes

Object property

URI: http://pgxo.loria.fr/causes

Subproperty of: influences

Inverse of: isCausedBy

decreases

Object property

URI: http://pgxo.loria.fr/decreases

Subproperty of: influences

Inverse of: isDecreasedBy

decreasesChanceOf

Object property

URI: http://pgxo.loria.fr/decreasesChanceOf

Subproperty of: influences

Inverse of: hasChanceDecreasedBy

Disease

Class

URI: http://pgxo.loria.fr/Disease

Subclass of: Phenotype

doesNotCause

Object property

URI: http://pgxo.loria.fr/doesNotCause

Subproperty of: doesNotInfluence

Inverse of: isNotCausedBy

doesNotDecrease

Object property

URI: http://pgxo.loria.fr/doesNotDecrease

Subproperty of: doesNotInfluence

Inverse of: isNotDecreasedBy

doesNotDecreaseChanceOf

Object property

URI: http://pgxo.loria.fr/doesNotDecreaseChanceOf

Subproperty of: doesNotInfluence

Inverse of: hasNotChanceDecreasedBy

doesNotIncrease

Object property

URI: http://pgxo.loria.fr/doesNotIncrease

Subproperty of: doesNotInfluence

Inverse of: isNotIncreasedBy

doesNotIncreaseChanceOf

Object property

URI: http://pgxo.loria.fr/doesNotIncreaseChanceOf

Subproperty of: doesNotInfluence

Inverse of: hasNotChanceIncreasedBy

doesNotInfluence

Object property

URI: http://pgxo.loria.fr/doesNotInfluence

Subproperty of: isNotAssociatedWith

Inverse of: isNotInfluencedBy

doesNotMetabolize

Object property

URI: http://pgxo.loria.fr/doesNotMetabolize

Subproperty of: doesNotInfluence

Inverse of: isNotMetabolizedBy

doesNotTransport

Object property

URI: http://pgxo.loria.fr/doesNotTransport

Subproperty of: doesNotInfluence

Inverse of: isNotTransportedBy

doesNotTreat

Object property

URI: http://pgxo.loria.fr/doesNotTreat

Subproperty of: isNotAssociatedWith

Inverse of: isNotTreatedBy

Drug

Class

URI: http://pgxo.loria.fr/Drug

Gene

Class

URI: http://pgxo.loria.fr/Gene

Subclass of: Genetic factor

Genetic factor

Class

URI: http://pgxo.loria.fr/GeneticFactor

Genomic variation

Class

URI: http://pgxo.loria.fr/GenomicVariation

Subclass of: Genetic factor

Haplotype

Class

URI: http://pgxo.loria.fr/Haplotype

Subclass of: Genomic variation

hasChanceDecreasedBy

Object property

URI: http://pgxo.loria.fr/hasChanceDecreasedBy

Subproperty of: isInfluencedBy

Inverse of: decreasesChanceOf

hasChanceIncreasedBy

Object property

URI: http://pgxo.loria.fr/hasChanceIncreasedBy

Subproperty of: isInfluencedBy

Inverse of: increasesChanceOf

hasNotChanceDecreasedBy

Object property

URI: http://pgxo.loria.fr/hasNotChanceDecreasedBy

Subproperty of: isNotInfluencedBy

Inverse of: doesNotDecreaseChanceOf

hasNotChanceIncreasedBy

Object property

URI: http://pgxo.loria.fr/hasNotChanceIncreasedBy

Subproperty of: isNotInfluencedBy

Inverse of: doesNotIncreaseChanceOf

increases

Object property

URI: http://pgxo.loria.fr/increases

Subproperty of: influences

Inverse of: isIncreasedBy

increasesChanceOf

Object property

URI: http://pgxo.loria.fr/increasesChanceOf

Subproperty of: influences

Inverse of: hasChanceIncreasedBy

influences

Object property

URI: http://pgxo.loria.fr/influences

Subproperty of: isAssociatedWith

Inverse of: isInfluencedBy

isAssociatedWith

Object property

URI: http://pgxo.loria.fr/isAssociatedWith

Symmetric property

isCausedBy

Object property

URI: http://pgxo.loria.fr/isCausedBy

Subproperty of: isInfluencedBy

Inverse of: causes

isDecreasedBy

Object property

URI: http://pgxo.loria.fr/isDecreasedBy

Subproperty of: isInfluencedBy

Inverse of: decreases

isIncreasedBy

Object property

URI: http://pgxo.loria.fr/isIncreasedBy

Subproperty of: isInfluencedBy

Inverse of: increases

isInfluencedBy

Object property

URI: http://pgxo.loria.fr/isInfluencedBy

Subproperty of: isAssociatedWith

Inverse of: influences

isMetabolizedBy

Object property

URI: http://pgxo.loria.fr/isMetabolizedBy

Subproperty of: isInfluencedBy

Inverse of: metabolizes

isNotAssociatedWith

Object property

URI: http://pgxo.loria.fr/isNotAssociatedWith

Symmetric property

isNotCausedBy

Object property

URI: http://pgxo.loria.fr/isNotCausedBy

Subproperty of: isNotInfluencedBy

Inverse of: doesNotCause

isNotDecreasedBy

Object property

URI: http://pgxo.loria.fr/isNotDecreasedBy

Subproperty of: isNotInfluencedBy

Inverse of: doesNotDecrease

isNotIncreasedBy

Object property

URI: http://pgxo.loria.fr/isNotIncreasedBy

Subproperty of: isNotInfluencedBy

Inverse of: doesNotIncrease

isNotInfluencedBy

Object property

URI: http://pgxo.loria.fr/isNotInfluencedBy

Subproperty of: isNotAssociatedWith

Inverse of: doesNotInfluence

isNotMetabolizedBy

Object property

URI: http://pgxo.loria.fr/isNotMetabolizedBy

Subproperty of: isNotInfluencedBy

Inverse of: doesNotMetabolize

isNotTransportedBy

Object property

URI: http://pgxo.loria.fr/isNotTransportedBy

Subproperty of: isNotInfluencedBy

Inverse of: doesNotTransport

isNotTreatedBy

Object property

URI: http://pgxo.loria.fr/isNotTreatedBy

Subproperty of: isNotAssociatedWith

Inverse of: doesNotTreat

isTransportedBy

Object property

URI: http://pgxo.loria.fr/isTransportedBy

Subproperty of: isInfluencedBy

Inverse of: transports

isTreatedBy

Object property

URI: http://pgxo.loria.fr/isTreatedBy

Subproperty of: isAssociatedWith

Inverse of: treats

metabolizes

Object property

URI: http://pgxo.loria.fr/metabolizes

Subproperty of: influences

Inverse of: isMetabolizedBy

Pharmacodynamic phenotype

Class

URI: http://pgxo.loria.fr/PharmacodynamicPhenotype

Subclass of: Phenotype

Pharmacogenomic relationship

Class

URI: http://pgxo.loria.fr/PharmacogenomicRelationship

Subclass of: prov:Entity

Pharmacokinetic phenotype

Class

URI: http://pgxo.loria.fr/PharmacokineticPhenotype

Subclass of: Phenotype

Phenotype

Class

URI: http://pgxo.loria.fr/Phenotype

qualifiedProxy

Object property

URI: http://pgxo.loria.fr/qualifiedProxy

qualifiedVariation

Object property

URI: http://pgxo.loria.fr/qualifiedVariation

transports

Object property

URI: http://pgxo.loria.fr/transports

Subproperty of: influences

Inverse of: isTransportedBy

treats

Object property

URI: http://pgxo.loria.fr/treats

Subproperty of: isAssociatedWith

Inverse of: isTreatedBy

Variant

Class

URI: http://pgxo.loria.fr/Variant

Subclass of: Genomic variation